IL_8G6J_139
3D structure
- PDB id
- 8G6J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state 2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GGUGUAGAAUAA*UAC
- Length
- 15 nucleotides
- Bulged bases
- 8G6J|1|L5|U|3964
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8G6J_139 not in the Motif Atlas
- Geometric match to IL_8F4O_005
- Geometric discrepancy: 0.2373
- The information below is about IL_8F4O_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_38565.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 10
Unit IDs
8G6J|1|L5|G|3955
8G6J|1|L5|G|3956
8G6J|1|L5|U|3957
8G6J|1|L5|G|3958
8G6J|1|L5|U|3959
8G6J|1|L5|A|3960
8G6J|1|L5|G|3961
8G6J|1|L5|A|3962
8G6J|1|L5|A|3963
8G6J|1|L5|U|3964
8G6J|1|L5|A|3965
8G6J|1|L5|A|3966
*
8G6J|1|L5|U|4055
8G6J|1|L5|A|4056
8G6J|1|L5|C|4057
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain Lz
- 60S ribosomal protein L10a
- Chain SF
- 40S ribosomal protein S5
- Chain SO
- 40S ribosomal protein S14
- Chain Sc
- 40S ribosomal protein S28
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