IL_8G6J_155

3D structure

PDB id

8G6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UUG*CCAAG

Length

8 nucleotides

Bulged bases

8G6J|1|L5|A|4488

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G6J_155 not in the Motif Atlas

Geometric match to IL_3DD2_004

Geometric discrepancy: 0.3838

The information below is about IL_3DD2_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_09353.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

8G6J|1|L5|U|4468
8G6J|1|L5|U|4469
8G6J|1|L5|G|4470
*
8G6J|1|L5|C|4485
8G6J|1|L5|C|4486
8G6J|1|L5|A|4487
8G6J|1|L5|A|4488
8G6J|1|L5|G|4489

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LH

60S ribosomal protein L9

Chain LO

60S ribosomal protein L13a

Chain Lm

eL40