IL_8G6J_328

3D structure

PDB id

8G6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UUA*U(A2M)

Length

5 nucleotides

Bulged bases

8G6J|1|S2|U|488

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G6J_328 not in the Motif Atlas

Homologous match to IL_8P9A_396

Geometric discrepancy: 0.0891

The information below is about IL_8P9A_396

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

129

Unit IDs

8G6J|1|S2|U|487
8G6J|1|S2|U|488
8G6J|1|S2|A|489
*
8G6J|1|S2|U|511
8G6J|1|S2|A2M|512

Current chains

Chain S2

18S rRNA

Nearby chains

Chain EF

Elongation factor 1-alpha 1

Chain SE

40S ribosomal protein S4, X isoform

Chain SJ

40S ribosomal protein S9

Chain SY

40S ribosomal protein S24