IL_8G6J_342

3D structure

PDB id

8G6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CAU*GAUCG

Length

8 nucleotides

Bulged bases

8G6J|1|L5|C|4064

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G6J_342 not in the Motif Atlas

Homologous match to IL_8CRE_102

Geometric discrepancy: 0.5062

The information below is about IL_8CRE_102

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8G6J|1|L5|C|3948
8G6J|1|L5|A|3949
8G6J|1|L5|U|3950
*
8G6J|1|L5|G|4061
8G6J|1|L5|A|4062
8G6J|1|L5|U|4063
8G6J|1|L5|C|4064
8G6J|1|L5|G|4065

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Li

60S ribosomal protein L36

Chain Lz

60S ribosomal protein L10a