IL_8G6W_019

3D structure

PDB id

8G6W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of WT E.coli 70S ribosome complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site ortho-aminobenzoic acid charged NH-tRNAPhe

Experimental method

ELECTRON MICROSCOPY

Resolution

2.02 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G6W_019 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.1428

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

8G6W|1|A|U|409
8G6W|1|A|G|410
8G6W|1|A|A|411
8G6W|1|A|A|412
8G6W|1|A|G|413
8G6W|1|A|A|414
8G6W|1|A|A|415
8G6W|1|A|G|416
*
8G6W|1|A|U|427
8G6W|1|A|G|428
8G6W|1|A|U|429
8G6W|1|A|A|430
8G6W|1|A|A|431
8G6W|1|A|A|432
8G6W|1|A|G|433

Current chains

Chain A

16S rRNA

Nearby chains

Chain D

30S ribosomal protein S4