IL_8G6W_168

3D structure

PDB id

8G6W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of WT E.coli 70S ribosome complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site ortho-aminobenzoic acid charged NH-tRNAPhe

Experimental method

ELECTRON MICROSCOPY

Resolution

2.02 Å

Loop

Sequence

UGUAAG*UUGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G6W_168 not in the Motif Atlas

Homologous match to IL_5J7L_354

Geometric discrepancy: 0.0495

The information below is about IL_5J7L_354

Detailed Annotation

tHS double platform

Broad Annotation

No text annotation

Motif group

IL_70411.2

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

7

Unit IDs

8G6W|1|a|U|2847
8G6W|1|a|G|2848
8G6W|1|a|U|2849
8G6W|1|a|A|2850
8G6W|1|a|A|2851
8G6W|1|a|G|2852
*
8G6W|1|a|U|2865
8G6W|1|a|U|2866
8G6W|1|a|G|2867
8G6W|1|a|A|2868
8G6W|1|a|G|2869

Current chains

Chain a

23S rRNA

Nearby chains

Chain m

50S ribosomal protein L17

Chain o

50S ribosomal protein L19