IL_8G6Y_001

3D structure

PDB id

8G6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site 3-aminopyridine-4-carboxylic acid charged NH-tRNAPhe

Experimental method

ELECTRON MICROSCOPY

Resolution

2.09 Å

Loop

Sequence

GUGGAUG*CUGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G6Y_001 not in the Motif Atlas

Geometric match to IL_5J7L_245

Geometric discrepancy: 0.0402

The information below is about IL_5J7L_245

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_04021.2

Basepair signature

cWW-L-R-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8G6Y|1|a|G|24
8G6Y|1|a|U|25
8G6Y|1|a|G|26
8G6Y|1|a|G|27
8G6Y|1|a|A|28
8G6Y|1|a|U|29
8G6Y|1|a|G|30
*
8G6Y|1|a|C|510
8G6Y|1|a|U|511
8G6Y|1|a|G|512
8G6Y|1|a|A|513
8G6Y|1|a|A|514
8G6Y|1|a|A|515
8G6Y|1|a|C|516

Current chains

Chain a

23S rRNA

Nearby chains

Chain p

50S ribosomal protein L20

Chain r

50S ribosomal protein L22

Chain z

50S ribosomal protein L32