IL_8G6Y_009

3D structure

PDB id

8G6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site 3-aminopyridine-4-carboxylic acid charged NH-tRNAPhe

Experimental method

ELECTRON MICROSCOPY

Resolution

2.09 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G6Y_009 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.3835

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

8G6Y|1|a|C|274
8G6Y|1|a|C|275
8G6Y|1|a|U|276
8G6Y|1|a|G|277
8G6Y|1|a|A|278
8G6Y|1|a|A|279
8G6Y|1|a|U|280
8G6Y|1|a|C|281
*
8G6Y|1|a|G|359
8G6Y|1|a|U|360
8G6Y|1|a|G|361
8G6Y|1|a|A|362
8G6Y|1|a|G|363

Current chains

Chain a

23S rRNA

Nearby chains