3D structure

PDB id
8G6Y (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site 3-aminopyridine-4-carboxylic acid charged NH-tRNAPhe
Experimental method
ELECTRON MICROSCOPY
Resolution
2.09 Å

Loop

Sequence
GGGAAAC*GGAAGAUGUAACGGGGC
Length
24 nucleotides
Bulged bases
8G6Y|1|a|A|1127, 8G6Y|1|a|U|1130
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8G6Y_037 not in the Motif Atlas
Geometric match to IL_5J7L_281
Geometric discrepancy: 0.0606
The information below is about IL_5J7L_281
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_50715.3
Basepair signature
cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
Number of instances in this motif group
4

Unit IDs

8G6Y|1|a|G|1024
8G6Y|1|a|G|1025
8G6Y|1|a|G|1026
8G6Y|1|a|A|1027
8G6Y|1|a|A|1028
8G6Y|1|a|A|1029
8G6Y|1|a|C|1030
*
8G6Y|1|a|G|1124
8G6Y|1|a|G|1125
8G6Y|1|a|A|1126
8G6Y|1|a|A|1127
8G6Y|1|a|G|1128
8G6Y|1|a|A|1129
8G6Y|1|a|U|1130
8G6Y|1|a|G|1131
8G6Y|1|a|U|1132
8G6Y|1|a|A|1133
8G6Y|1|a|A|1134
8G6Y|1|a|C|1135
8G6Y|1|a|G|1136
8G6Y|1|a|G|1137
8G6Y|1|a|G|1138
8G6Y|1|a|G|1139
8G6Y|1|a|C|1140

Current chains

Chain a
23S rRNA

Nearby chains

Chain 3
50S ribosomal protein L36
Chain d
50S ribosomal protein L3
Chain i
50S ribosomal protein L13
Chain l
50S ribosomal protein L16

Coloring options:


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