IL_8G6Y_040

3D structure

PDB id

8G6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site 3-aminopyridine-4-carboxylic acid charged NH-tRNAPhe

Experimental method

ELECTRON MICROSCOPY

Resolution

2.09 Å

Loop

Sequence

CCCAGACAG*UCGAG

Length

14 nucleotides

Bulged bases

8G6Y|1|a|A|1046

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G6Y_040 not in the Motif Atlas

Homologous match to IL_7RQB_042

Geometric discrepancy: 0.1981

The information below is about IL_7RQB_042

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90538.4

Basepair signature

cWW-tSS-tSH-L-tHS-R-cWW-L-L

Number of instances in this motif group

6

Unit IDs

8G6Y|1|a|C|1043
8G6Y|1|a|C|1044
8G6Y|1|a|C|1045
8G6Y|1|a|A|1046
8G6Y|1|a|G|1047
8G6Y|1|a|A|1048
8G6Y|1|a|C|1049
8G6Y|1|a|A|1050
8G6Y|1|a|G|1051
*
8G6Y|1|a|U|1108
8G6Y|1|a|C|1109
8G6Y|1|a|G|1110
8G6Y|1|a|A|1111
8G6Y|1|a|G|1112

Current chains

Chain a

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein L36

Chain g

50S ribosomal protein L6