3D structure

PDB id
8G6Y (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site 3-aminopyridine-4-carboxylic acid charged NH-tRNAPhe
Experimental method
ELECTRON MICROSCOPY
Resolution
2.09 Å

Loop

Sequence
AUAAGUAA*UGAAAUU
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8G6Y_044 not in the Motif Atlas
Homologous match to IL_5J7L_289
Geometric discrepancy: 0.0464
The information below is about IL_5J7L_289
Detailed Annotation
8x7 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_04346.10
Basepair signature
cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
Number of instances in this motif group
15

Unit IDs

8G6Y|1|a|A|1262
8G6Y|1|a|U|1263
8G6Y|1|a|A|1264
8G6Y|1|a|A|1265
8G6Y|1|a|G|1266
8G6Y|1|a|U|1267
8G6Y|1|a|A|1268
8G6Y|1|a|A|1269
*
8G6Y|1|a|U|2011
8G6Y|1|a|G|2012
8G6Y|1|a|A|2013
8G6Y|1|a|A|2014
8G6Y|1|a|A|2015
8G6Y|1|a|U|2016
8G6Y|1|a|U|2017

Current chains

Chain a
23S rRNA

Nearby chains

Chain e
50S ribosomal protein L4
Chain r
50S ribosomal protein L22
Chain z
50S ribosomal protein L32

Coloring options:


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