3D structure

PDB id
8G6Y (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site 3-aminopyridine-4-carboxylic acid charged NH-tRNAPhe
Experimental method
ELECTRON MICROSCOPY
Resolution
2.09 Å

Loop

Sequence
GAGAAC*GAC
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8G6Y_059 not in the Motif Atlas
Homologous match to IL_5J7L_304
Geometric discrepancy: 0.0398
The information below is about IL_5J7L_304
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_12566.4
Basepair signature
cWW-L-tHS-L-cWW-L
Number of instances in this motif group
5

Unit IDs

8G6Y|1|a|G|1651
8G6Y|1|a|A|1652
8G6Y|1|a|G|1653
8G6Y|1|a|A|1654
8G6Y|1|a|A|1655
8G6Y|1|a|C|1656
*
8G6Y|1|a|G|2004
8G6Y|1|a|A|2005
8G6Y|1|a|C|2006

Current chains

Chain a
23S rRNA

Nearby chains

Chain d
50S ribosomal protein L3
Chain m
50S ribosomal protein L17

Coloring options:


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