IL_8G6Y_063

3D structure

PDB id

8G6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site 3-aminopyridine-4-carboxylic acid charged NH-tRNAPhe

Experimental method

ELECTRON MICROSCOPY

Resolution

2.09 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

8G6Y|1|a|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G6Y_063 not in the Motif Atlas

Homologous match to IL_5J7L_308

Geometric discrepancy: 0.0583

The information below is about IL_5J7L_308

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

8G6Y|1|a|C|1686
8G6Y|1|a|G|1687
8G6Y|1|a|U|1688
8G6Y|1|a|A|1689
8G6Y|1|a|A|1690
8G6Y|1|a|C|1691
*
8G6Y|1|a|G|1696
8G6Y|1|a|G|1697
8G6Y|1|a|A|1698
8G6Y|1|a|G|1699
8G6Y|1|a|A|1700
8G6Y|1|a|A|1701
8G6Y|1|a|G|1702

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L2