IL_8G6Y_064

3D structure

PDB id

8G6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site 3-aminopyridine-4-carboxylic acid charged NH-tRNAPhe

Experimental method

ELECTRON MICROSCOPY

Resolution

2.09 Å

Loop

Sequence

UAUGUAG*UGAAA

Length

12 nucleotides

Bulged bases

8G6Y|1|a|U|1714

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G6Y_064 not in the Motif Atlas

Homologous match to IL_5J7L_309

Geometric discrepancy: 0.1181

The information below is about IL_5J7L_309

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8G6Y|1|a|U|1712
8G6Y|1|a|A|1713
8G6Y|1|a|U|1714
8G6Y|1|a|G|1715
8G6Y|1|a|U|1716
8G6Y|1|a|A|1717
8G6Y|1|a|G|1718
*
8G6Y|1|a|U|1742
8G6Y|1|a|G|1743
8G6Y|1|a|A|1744
8G6Y|1|a|A|1745
8G6Y|1|a|A|1746

Current chains

Chain a

23S rRNA

Nearby chains