IL_8G6Y_088

3D structure

PDB id

8G6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site 3-aminopyridine-4-carboxylic acid charged NH-tRNAPhe

Experimental method

ELECTRON MICROSCOPY

Resolution

2.09 Å

Loop

Sequence

AUA*UGUUU

Length

8 nucleotides

Bulged bases

8G6Y|1|a|U|2491

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G6Y_088 not in the Motif Atlas

Homologous match to IL_5J7L_337

Geometric discrepancy: 0.0695

The information below is about IL_5J7L_337

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_51387.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

20

Unit IDs

8G6Y|1|a|A|2459
8G6Y|1|a|U|2460
8G6Y|1|a|A|2461
*
8G6Y|1|a|U|2489
8G6Y|1|a|G|2490
8G6Y|1|a|U|2491
8G6Y|1|a|U|2492
8G6Y|1|a|U|2493

Current chains

Chain a

23S rRNA

Nearby chains

Chain Y

Transfer RNA; tRNA

Chain l

50S ribosomal protein L16