IL_8G6Y_102

3D structure

PDB id

8G6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site 3-aminopyridine-4-carboxylic acid charged NH-tRNAPhe

Experimental method

ELECTRON MICROSCOPY

Resolution

2.09 Å

Loop

Sequence

CUGAAG*CGUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G6Y_102 not in the Motif Atlas

Homologous match to IL_5J7L_351

Geometric discrepancy: 0.0795

The information below is about IL_5J7L_351

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_29471.1

Basepair signature

cWW-cWW-L-tHS-L-cWW

Number of instances in this motif group

1

Unit IDs

8G6Y|1|a|C|2806
8G6Y|1|a|U|2807
8G6Y|1|a|G|2808
8G6Y|1|a|A|2809
8G6Y|1|a|A|2810
8G6Y|1|a|G|2811
*
8G6Y|1|a|C|2889
8G6Y|1|a|G|2890
8G6Y|1|a|U|2891
8G6Y|1|a|G|2892

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L3

Chain r

50S ribosomal protein L22

Chain z

50S ribosomal protein L32