3D structure

PDB id
8G6Y (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site 3-aminopyridine-4-carboxylic acid charged NH-tRNAPhe
Experimental method
ELECTRON MICROSCOPY
Resolution
2.09 Å

Loop

Sequence
UGUAAG*UUGAG
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8G6Y_105 not in the Motif Atlas
Homologous match to IL_5J7L_354
Geometric discrepancy: 0.0444
The information below is about IL_5J7L_354
Detailed Annotation
tHS double platform
Broad Annotation
No text annotation
Motif group
IL_70411.2
Basepair signature
cWW-tSH-L-tHH-L-cWW
Number of instances in this motif group
7

Unit IDs

8G6Y|1|a|U|2847
8G6Y|1|a|G|2848
8G6Y|1|a|U|2849
8G6Y|1|a|A|2850
8G6Y|1|a|A|2851
8G6Y|1|a|G|2852
*
8G6Y|1|a|U|2865
8G6Y|1|a|U|2866
8G6Y|1|a|G|2867
8G6Y|1|a|A|2868
8G6Y|1|a|G|2869

Current chains

Chain a
23S rRNA

Nearby chains

Chain m
50S ribosomal protein L17
Chain o
50S ribosomal protein L19

Coloring options:


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