IL_8G7P_006

3D structure

PDB id

8G7P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli 70S ribosome in complex with EF-Tu and Ile-tRNAIle(LAU) bound to the cognate AUA codon (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAACUG*CUAAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G7P_006 not in the Motif Atlas

Geometric match to IL_5J7L_250

Geometric discrepancy: 0.0894

The information below is about IL_5J7L_250

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

8G7P|1|A|G|188
8G7P|1|A|G|189
8G7P|1|A|A|190
8G7P|1|A|A|191
8G7P|1|A|C|192
8G7P|1|A|U|193
8G7P|1|A|G|194
*
8G7P|1|A|C|201
8G7P|1|A|U|202
8G7P|1|A|A|203
8G7P|1|A|A|204
8G7P|1|A|G|205
8G7P|1|A|U|206
8G7P|1|A|A|207
8G7P|1|A|C|208

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 7

50S ribosomal protein L35

Chain N

50S ribosomal protein L15

Chain Z

50S ribosomal protein L28