IL_8G7Q_138

3D structure

PDB id

8G7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli 70S ribosome in complex with EF-Tu and Ile-tRNAIle(LAU) bound to the near-cognate AUG codon (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G7Q_138 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.1335

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

8G7Q|1|a|U|409
8G7Q|1|a|G|410
8G7Q|1|a|A|411
8G7Q|1|a|A|412
8G7Q|1|a|G|413
8G7Q|1|a|A|414
8G7Q|1|a|A|415
8G7Q|1|a|G|416
*
8G7Q|1|a|U|427
8G7Q|1|a|G|428
8G7Q|1|a|U|429
8G7Q|1|a|A|430
8G7Q|1|a|A|431
8G7Q|1|a|A|432
8G7Q|1|a|G|433

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain d

30S ribosomal protein S4