IL_8G7R_032

3D structure

PDB id

8G7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli 70S ribosome in complex with A-site tRNAIle(LAU) bound to the cognate AUA codon (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGGG*CUUAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G7R_032 not in the Motif Atlas

Geometric match to IL_1D4R_001

Geometric discrepancy: 0.3086

The information below is about IL_1D4R_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

8G7R|1|A|G|880
8G7R|1|A|G|881
8G7R|1|A|G|882
8G7R|1|A|G|883
*
8G7R|1|A|C|893
8G7R|1|A|U|894
8G7R|1|A|U|895
8G7R|1|A|A|896
8G7R|1|A|C|897

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain w

Transfer RNA; tRNA