IL_8G7R_138

3D structure

PDB id

8G7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli 70S ribosome in complex with A-site tRNAIle(LAU) bound to the cognate AUA codon (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G7R_138 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.1214

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

8G7R|1|a|U|409
8G7R|1|a|G|410
8G7R|1|a|A|411
8G7R|1|a|A|412
8G7R|1|a|G|413
8G7R|1|a|A|414
8G7R|1|a|A|415
8G7R|1|a|G|416
*
8G7R|1|a|U|427
8G7R|1|a|G|428
8G7R|1|a|U|429
8G7R|1|a|A|430
8G7R|1|a|A|431
8G7R|1|a|A|432
8G7R|1|a|G|433

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain d

30S ribosomal protein S4