IL_8G7U_004

3D structure

PDB id

8G7U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of RNP end 2

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UGUA*UACA

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary: UGUA,UACA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G7U_004 not in the Motif Atlas

Geometric match to IL_7KJT_003

Geometric discrepancy: 0.2918

The information below is about IL_7KJT_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

56

Unit IDs

8G7U|1|X|U|19
8G7U|1|X|G|20
8G7U|1|X|U|21
8G7U|1|X|A|22
*
8G7U|1|Y|U|3
8G7U|1|Y|A|4
8G7U|1|Y|C|5
8G7U|1|Y|A|6

Current chains

Chain X

p3dsRNA24a

Chain Y

p3dsRNA24b

Nearby chains

Chain C

Antiviral innate immune response receptor RIG-I