IL_8H6L_008

3D structure

PDB id

8H6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of human exon-defined spliceosome in the early B state.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CUGG*CAACUCUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8H6L|1|5A|C|6
8H6L|1|5A|U|7
8H6L|1|5A|G|8
8H6L|1|5A|G|9
*
8H6L|1|5A|C|68
8H6L|1|5A|A|69
8H6L|1|5A|A|70
8H6L|1|5A|C|71
8H6L|1|5A|U|72
8H6L|1|5A|C|73
8H6L|1|5A|U|74
8H6L|1|5A|G|75

Current chains

Chain 5A

U5 snRNA

Nearby chains

Chain 5C

116 kDa U5 small nuclear ribonucleoprotein component

Chain 5E

U5 small nuclear ribonucleoprotein 40 kDa protein