IL_8HB1_004

3D structure

PDB id

8HB1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of NAD-II riboswitch (two strands) with NMN

Experimental method

X-RAY DIFFRACTION

Resolution

2.23 Å

Loop

Sequence

CGU*AG

Length

5 nucleotides

Bulged bases

8HB1|1|A|G|11

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HB1_004 not in the Motif Atlas

Geometric match to IL_8I3Z_004

Geometric discrepancy: 0.0686

The information below is about IL_8I3Z_004

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

60

Unit IDs

8HB1|1|A|C|10
8HB1|1|A|G|11
8HB1|1|A|U|12
*
8HB1|1|B|A|53
8HB1|1|B|G|54

Current chains

Chain A

RNA (5'-R(*AP*GP*AP*GP*CP*GP*UP*UP*GP*CP*GP*UP*CP*CP*GP*AP*AP*AP*GP*UP*(CBV)P*GP*CP*C)-3')

Chain B

RNA (30-MER)

Nearby chains