IL_8HB3_003

3D structure

PDB id

8HB3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of NAD-II riboswitch (two strands) with NR

Experimental method

X-RAY DIFFRACTION

Resolution

2.87 Å

Loop

Sequence

U(CBV)G*CGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HB3_003 not in the Motif Atlas

Geometric match to IL_4WF9_042

Geometric discrepancy: 0.1415

The information below is about IL_4WF9_042

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

8HB3|1|A|U|20
8HB3|1|A|CBV|21
8HB3|1|A|G|22
*
8HB3|1|B|C|27
8HB3|1|B|G|28
8HB3|1|B|A|29

Current chains

Chain A

RNA (5'-R(*AP*GP*AP*GP*CP*GP*UP*UP*GP*CP*GP*UP*CP*CP*GP*AP*AP*AP*GP*UP*(CBV)P*GP*CP*C)-3')

Chain B

RNA (31-MER)

Nearby chains