IL_8HF0_001

3D structure

PDB id

8HF0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

DmDcr-2/R2D2/LoqsPD with 50bp-dsRNA in Dimer state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.72 Å

Loop

Sequence

ACA*UGU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: ACA,UGU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HF0_001 not in the Motif Atlas

Geometric match to IL_1Z7F_006

Geometric discrepancy: 0.234

The information below is about IL_1Z7F_006

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

215

Unit IDs

8HF0|1|N|A|35
8HF0|1|N|C|36
8HF0|1|N|A|37
*
8HF0|1|P|U|14
8HF0|1|P|G|15
8HF0|1|P|U|16

Current chains

Chain N

RNA (52-MER)

Chain P

RNA (52-MER)

Nearby chains

Chain D

Dicer-2, isoform A