IL_8HL4_066
3D structure
- PDB id
- 8HL4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.62 Å
Loop
- Sequence
- GUGGAUG*CUGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8HL4_066 not in the Motif Atlas
- Geometric match to IL_5J7L_245
- Geometric discrepancy: 0.1403
- The information below is about IL_5J7L_245
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_04021.2
- Basepair signature
- cWW-L-R-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
8HL4|1|A23S|G|15
8HL4|1|A23S|U|16
8HL4|1|A23S|G|17
8HL4|1|A23S|G|18
8HL4|1|A23S|A|19
8HL4|1|A23S|U|20
8HL4|1|A23S|G|21
*
8HL4|1|A23S|C|553
8HL4|1|A23S|U|554
8HL4|1|A23S|G|555
8HL4|1|A23S|A|556
8HL4|1|A23S|A|557
8HL4|1|A23S|A|558
8HL4|1|A23S|C|559
Current chains
- Chain A23S
- 23s rRNA (3000-MER)
Nearby chains
- Chain AL4P
- 50S ribosomal protein L4
- Chain L22P
- 50S ribosomal protein L22
- Chain L32E
- 50S ribosomal protein L32e
- Chain L46A
- Conserved protein
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