IL_8HL4_072

3D structure

PDB id

8HL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.62 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HL4_072 not in the Motif Atlas

Geometric match to IL_7A0S_005

Geometric discrepancy: 0.1445

The information below is about IL_7A0S_005

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

61

Unit IDs

8HL4|1|A23S|C|162
8HL4|1|A23S|C|163
*
8HL4|1|A23S|G|191
8HL4|1|A23S|A|192
8HL4|1|A23S|G|193

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain L15E

50S ribosomal protein L15e

Chain L37E

50S ribosomal protein L37e