IL_8HL4_073

3D structure

PDB id

8HL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.62 Å

Loop

Sequence

CGAACG*UUAGUAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HL4_073 not in the Motif Atlas

Geometric match to IL_7RQB_007

Geometric discrepancy: 0.1506

The information below is about IL_7RQB_007

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_76042.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

8HL4|1|A23S|C|167
8HL4|1|A23S|G|168
8HL4|1|A23S|A|169
8HL4|1|A23S|A|170
8HL4|1|A23S|C|171
8HL4|1|A23S|G|172
*
8HL4|1|A23S|U|181
8HL4|1|A23S|U|182
8HL4|1|A23S|A|183
8HL4|1|A23S|G|184
8HL4|1|A23S|U|185
8HL4|1|A23S|A|186
8HL4|1|A23S|G|187

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain L15E

50S ribosomal protein L15e

Chain L37E

50S ribosomal protein L37e