IL_8HL4_074

3D structure

PDB id

8HL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.62 Å

Loop

Sequence

UGAGUAG*CGAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HL4_074 not in the Motif Atlas

Geometric match to IL_7RQB_007

Geometric discrepancy: 0.1431

The information below is about IL_7RQB_007

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_76042.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

8HL4|1|A23S|U|218
8HL4|1|A23S|G|219
8HL4|1|A23S|A|220
8HL4|1|A23S|G|221
8HL4|1|A23S|U|222
8HL4|1|A23S|A|223
8HL4|1|A23S|G|224
*
8HL4|1|A23S|C|232
8HL4|1|A23S|G|233
8HL4|1|A23S|A|234
8HL4|1|A23S|A|235
8HL4|1|A23S|A|236
8HL4|1|A23S|G|237

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain L15P

50S ribosomal protein L15