IL_8HL4_086

3D structure

PDB id

8HL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.62 Å

Loop

Sequence

GGAAAG*UUAGUAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HL4_086 not in the Motif Atlas

Geometric match to IL_7RQB_007

Geometric discrepancy: 0.1608

The information below is about IL_7RQB_007

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_76042.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

8HL4|1|A23S|G|607
8HL4|1|A23S|G|608
8HL4|1|A23S|A|609
8HL4|1|A23S|A|610
8HL4|1|A23S|A|611
8HL4|1|A23S|G|612
*
8HL4|1|A23S|U|625
8HL4|1|A23S|U|626
8HL4|1|A23S|A|627
8HL4|1|A23S|G|628
8HL4|1|A23S|U|629
8HL4|1|A23S|A|630
8HL4|1|A23S|C|631

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain L30P

50S ribosomal protein L30