IL_8HL4_088

3D structure

PDB id

8HL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.62 Å

Loop

Sequence

CGCAG*CGAGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HL4_088 not in the Motif Atlas

Geometric match to IL_4V9F_022

Geometric discrepancy: 0.1501

The information below is about IL_4V9F_022

Detailed Annotation

tSH-tWH-tHS

Broad Annotation

No text annotation

Motif group

IL_05821.2

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

19

Unit IDs

8HL4|1|A23S|C|743
8HL4|1|A23S|G|744
8HL4|1|A23S|C|745
8HL4|1|A23S|A|746
8HL4|1|A23S|G|747
*
8HL4|1|A23S|C|761
8HL4|1|A23S|G|762
8HL4|1|A23S|A|763
8HL4|1|A23S|G|764
8HL4|1|A23S|G|765

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain L18E

50S ribosomal protein L18e