IL_8HL4_106

3D structure

PDB id

8HL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.62 Å

Loop

Sequence

CCCCAAAG*CG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HL4_106 not in the Motif Atlas

Geometric match to IL_4V9F_038

Geometric discrepancy: 0.1561

The information below is about IL_4V9F_038

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_11411.2

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

8HL4|1|A23S|C|1140
8HL4|1|A23S|C|1141
8HL4|1|A23S|C|1142
8HL4|1|A23S|C|1143
8HL4|1|A23S|A|1144
8HL4|1|A23S|A|1145
8HL4|1|A23S|A|1146
8HL4|1|A23S|G|1147
*
8HL4|1|A23S|C|1291
8HL4|1|A23S|G|1292

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain L13P

50S ribosomal protein L13

Chain L30P

50S ribosomal protein L30