IL_8HL4_107

3D structure

PDB id

8HL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.62 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

8HL4|1|A23S|U|1148

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HL4_107 not in the Motif Atlas

Geometric match to IL_5J7L_279

Geometric discrepancy: 0.2072

The information below is about IL_5J7L_279

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

8HL4|1|A23S|G|1147
8HL4|1|A23S|U|1148
8HL4|1|A23S|C|1149
*
8HL4|1|A23S|G|1290
8HL4|1|A23S|C|1291

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain ALX0

50S ribosomal protein L18Ae

Chain L13P

50S ribosomal protein L13

Chain L142

50S ribosomal protein L14e

Chain L30P

50S ribosomal protein L30