IL_8HL4_109
3D structure
- PDB id
- 8HL4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.62 Å
Loop
- Sequence
- CCAACGAAAA*UAAAGAUUGGUCGGGG
- Length
- 26 nucleotides
- Bulged bases
- 8HL4|1|A23S|A|1267, 8HL4|1|A23S|U|1271, 8HL4|1|A23S|G|1272, 8HL4|1|A23S|G|1273
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8HL4|1|A23S|C|1161
8HL4|1|A23S|C|1162
8HL4|1|A23S|A|1163
8HL4|1|A23S|A|1164
8HL4|1|A23S|C|1165
8HL4|1|A23S|G|1166
8HL4|1|A23S|A|1167
8HL4|1|A23S|A|1168
8HL4|1|A23S|A|1169
8HL4|1|A23S|A|1170
*
8HL4|1|A23S|U|1264
8HL4|1|A23S|A|1265
8HL4|1|A23S|A|1266
8HL4|1|A23S|A|1267
8HL4|1|A23S|G|1268
8HL4|1|A23S|A|1269
8HL4|1|A23S|U|1270
8HL4|1|A23S|U|1271
8HL4|1|A23S|G|1272
8HL4|1|A23S|G|1273
8HL4|1|A23S|U|1274
8HL4|1|A23S|C|1275
8HL4|1|A23S|G|1276
8HL4|1|A23S|G|1277
8HL4|1|A23S|G|1278
8HL4|1|A23S|G|1279
Current chains
- Chain A23S
- 23s rRNA (3000-MER)
Nearby chains
- Chain A5S
- 5S ribosomal RNA; 5S rRNA
- Chain AL3P
- 50S ribosomal protein L3
- Chain L10E
- 50S ribosomal protein L10e
- Chain L13P
- 50S ribosomal protein L13
- Chain L30P
- 50S ribosomal protein L30
- Chain L40E
- 50S ribosomal protein L40E
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