IL_8HL4_129

3D structure

PDB id

8HL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.62 Å

Loop

Sequence

GGGUAAC*GGC

Length

10 nucleotides

Bulged bases

8HL4|1|A23S|G|1809, 8HL4|1|A23S|U|1810

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HL4_129 not in the Motif Atlas

Geometric match to IL_5J7L_304

Geometric discrepancy: 0.3133

The information below is about IL_5J7L_304

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_12566.4

Basepair signature

cWW-L-tHS-L-cWW-L

Number of instances in this motif group

5

Unit IDs

8HL4|1|A23S|G|1807
8HL4|1|A23S|G|1808
8HL4|1|A23S|G|1809
8HL4|1|A23S|U|1810
8HL4|1|A23S|A|1811
8HL4|1|A23S|A|1812
8HL4|1|A23S|C|1813
*
8HL4|1|A23S|G|2133
8HL4|1|A23S|G|2134
8HL4|1|A23S|C|2135

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain AL3P

50S ribosomal protein L3

Chain L22P

50S ribosomal protein L22

Chain L31E

50S ribosomal protein L31e