IL_8HL4_134

3D structure

PDB id

8HL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.62 Å

Loop

Sequence

CU*GCG

Length

5 nucleotides

Bulged bases

8HL4|1|A23S|C|2110

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HL4_134 not in the Motif Atlas

Geometric match to IL_7A0S_055

Geometric discrepancy: 0.2536

The information below is about IL_7A0S_055

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

67

Unit IDs

8HL4|1|A23S|C|1914
8HL4|1|A23S|U|1915
*
8HL4|1|A23S|G|2109
8HL4|1|A23S|C|2110
8HL4|1|A23S|G|2111

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains