IL_8HL4_144

3D structure

PDB id

8HL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.62 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

8HL4|1|A23S|A|2563

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HL4_144 not in the Motif Atlas

Geometric match to IL_5TBW_094

Geometric discrepancy: 0.1488

The information below is about IL_5TBW_094

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

8HL4|1|A23S|G|2199
8HL4|1|A23S|A|2200
*
8HL4|1|A23S|U|2562
8HL4|1|A23S|A|2563
8HL4|1|A23S|C|2564
8HL4|1|A23S|C|2565

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain AL2P

50S ribosomal protein L2

Chain APTN

Transfer RNA; tRNA

Chain APTP

PHE-PHE-PHE-PHE-PHE-PHE