IL_8HL4_147

3D structure

PDB id

8HL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.62 Å

Loop

Sequence

AUG*CAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: AUG,CAU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HL4_147 not in the Motif Atlas

Geometric match to IL_3RG5_002

Geometric discrepancy: 0.3348

The information below is about IL_3RG5_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_68118.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

8HL4|1|A23S|A|2237
8HL4|1|A23S|U|2238
8HL4|1|A23S|G|2239
*
8HL4|1|A23S|C|2308
8HL4|1|A23S|A|2309
8HL4|1|A23S|U|2310

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain AL1P

50S ribosomal protein L1