IL_8HL4_159

3D structure

PDB id

8HL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.62 Å

Loop

Sequence

GCGAG*CGACC

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HL4_159 not in the Motif Atlas

Geometric match to IL_5J7L_338

Geometric discrepancy: 0.2357

The information below is about IL_5J7L_338

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

8HL4|1|A23S|G|2590
8HL4|1|A23S|C|2591
8HL4|1|A23S|G|2592
8HL4|1|A23S|A|2593
8HL4|1|A23S|G|2594
*
8HL4|1|A23S|C|2604
8HL4|1|A23S|G|2605
8HL4|1|A23S|A|2606
8HL4|1|A23S|C|2607
8HL4|1|A23S|C|2608

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain L10E

50S ribosomal protein L10e

Chain L40E

50S ribosomal protein L40E