IL_8HL4_169

3D structure

PDB id

8HL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.62 Å

Loop

Sequence

UUUAC*GGCAG

Length

10 nucleotides

Bulged bases

8HL4|1|A23S|U|2814

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HL4_169 not in the Motif Atlas

Geometric match to IL_4V9F_094

Geometric discrepancy: 0.1556

The information below is about IL_4V9F_094

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_45790.2

Basepair signature

cWW-tSH-L-tHS-cWW

Number of instances in this motif group

12

Unit IDs

8HL4|1|A23S|U|2812
8HL4|1|A23S|U|2813
8HL4|1|A23S|U|2814
8HL4|1|A23S|A|2815
8HL4|1|A23S|C|2816
*
8HL4|1|A23S|G|2841
8HL4|1|A23S|G|2842
8HL4|1|A23S|C|2843
8HL4|1|A23S|A|2844
8HL4|1|A23S|G|2845

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain AL3P

50S ribosomal protein L3

Chain L24E

50S ribosomal protein L24e

Chain L31E

50S ribosomal protein L31e