IL_8HL4_170

3D structure

PDB id

8HL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.62 Å

Loop

Sequence

UU*AAUG

Length

6 nucleotides

Bulged bases

8HL4|1|A23S|A|2835, 8HL4|1|A23S|U|2836

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HL4_170 not in the Motif Atlas

Geometric match to IL_1KXK_003

Geometric discrepancy: 0.1647

The information below is about IL_1KXK_003

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

8HL4|1|A23S|U|2820
8HL4|1|A23S|U|2821
*
8HL4|1|A23S|A|2834
8HL4|1|A23S|A|2835
8HL4|1|A23S|U|2836
8HL4|1|A23S|G|2837

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain L19E

50S ribosomal protein L19e

Chain L31E

50S ribosomal protein L31e