IL_8HL4_174

3D structure

PDB id

8HL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.62 Å

Loop

Sequence

GG*CGC

Length

5 nucleotides

Bulged bases

8HL4|1|A23S|G|2999

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HL4_174 not in the Motif Atlas

Geometric match to IL_3IGI_004

Geometric discrepancy: 0.1905

The information below is about IL_3IGI_004

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

76

Unit IDs

8HL4|1|A23S|G|2957
8HL4|1|A23S|G|2958
*
8HL4|1|A23S|C|2998
8HL4|1|A23S|G|2999
8HL4|1|A23S|C|3000

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain AL3P

50S ribosomal protein L3

Chain L31E

50S ribosomal protein L31e