IL_8HL4_175

3D structure

PDB id

8HL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.62 Å

Loop

Sequence

UGUAAG*UUUAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HL4_175 not in the Motif Atlas

Geometric match to IL_4WF9_108

Geometric discrepancy: 0.2846

The information below is about IL_4WF9_108

Detailed Annotation

tHS double platform

Broad Annotation

No text annotation

Motif group

IL_48489.2

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

9

Unit IDs

8HL4|1|A23S|U|2961
8HL4|1|A23S|G|2962
8HL4|1|A23S|U|2963
8HL4|1|A23S|A|2964
8HL4|1|A23S|A|2965
8HL4|1|A23S|G|2966
*
8HL4|1|A23S|U|2991
8HL4|1|A23S|U|2992
8HL4|1|A23S|U|2993
8HL4|1|A23S|A|2994
8HL4|1|A23S|G|2995

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain L24E

50S ribosomal protein L24e