IL_8HSP_052

3D structure

PDB id

8HSP (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with tRNA_Ile2 bearing L34 and t6A37 in classical state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

CUGC*GAGGAAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HSP_052 not in the Motif Atlas

Homologous match to IL_5J7L_053

Geometric discrepancy: 0.1421

The information below is about IL_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42032.1

Basepair signature

cWW-cSH-cWW-tWH-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

8HSP|1|A|C|1158
8HSP|1|A|U|1159
8HSP|1|A|G|1160
8HSP|1|A|C|1161
*
8HSP|1|A|G|1175
8HSP|1|A|A|1176
8HSP|1|A|G|1177
8HSP|1|A|G|1178
8HSP|1|A|A|1179
8HSP|1|A|A|1180
8HSP|1|A|G|1181

Current chains

Chain A

16S rRNA

Nearby chains

Chain B

30S ribosomal protein S2

Chain I

30S ribosomal protein S9