IL_8HSP_073

3D structure

PDB id

8HSP (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with tRNA_Ile2 bearing L34 and t6A37 in classical state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HSP_073 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.3895

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

8HSP|1|a|C|274
8HSP|1|a|C|275
8HSP|1|a|U|276
8HSP|1|a|G|277
8HSP|1|a|A|278
8HSP|1|a|A|279
8HSP|1|a|U|280
8HSP|1|a|C|281
*
8HSP|1|a|G|359
8HSP|1|a|U|360
8HSP|1|a|G|361
8HSP|1|a|A|362
8HSP|1|a|G|363

Current chains

Chain a

23S rRNA

Nearby chains