IL_8HSP_114

3D structure

PDB id

8HSP (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with tRNA_Ile2 bearing L34 and t6A37 in classical state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

CGAAG*CUAAG

Length

10 nucleotides

Bulged bases

8HSP|1|a|A|1420

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HSP_114 not in the Motif Atlas

Homologous match to IL_5J7L_295

Geometric discrepancy: 0.11

The information below is about IL_5J7L_295

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_38507.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

16

Unit IDs

8HSP|1|a|C|1417
8HSP|1|a|G|1418
8HSP|1|a|A|1419
8HSP|1|a|A|1420
8HSP|1|a|G|1421
*
8HSP|1|a|C|1577
8HSP|1|a|U|1578
8HSP|1|a|A|1579
8HSP|1|a|A|1580
8HSP|1|a|G|1581

Current chains

Chain a

23S rRNA

Nearby chains