IL_8HSP_126

3D structure

PDB id

8HSP (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with tRNA_Ile2 bearing L34 and t6A37 in classical state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

ACUAGG*CUGU

Length

10 nucleotides

Bulged bases

8HSP|1|a|G|1992

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HSP_126 not in the Motif Atlas

Geometric match to IL_5J7L_307

Geometric discrepancy: 0.0479

The information below is about IL_5J7L_307

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_76758.2

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

8HSP|1|a|A|1669
8HSP|1|a|C|1670
8HSP|1|a|U|1671
8HSP|1|a|A|1672
8HSP|1|a|G|1673
8HSP|1|a|G|1674
*
8HSP|1|a|C|1990
8HSP|1|a|U|1991
8HSP|1|a|G|1992
8HSP|1|a|U|1993

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L3

Chain j

50S ribosomal protein L14