IL_8HSP_128

3D structure

PDB id

8HSP (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with tRNA_Ile2 bearing L34 and t6A37 in classical state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

UAUGUAG*UGAAA

Length

12 nucleotides

Bulged bases

8HSP|1|a|U|1714

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HSP_128 not in the Motif Atlas

Homologous match to IL_5J7L_309

Geometric discrepancy: 0.1365

The information below is about IL_5J7L_309

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8HSP|1|a|U|1712
8HSP|1|a|A|1713
8HSP|1|a|U|1714
8HSP|1|a|G|1715
8HSP|1|a|U|1716
8HSP|1|a|A|1717
8HSP|1|a|G|1718
*
8HSP|1|a|U|1742
8HSP|1|a|G|1743
8HSP|1|a|A|1744
8HSP|1|a|A|1745
8HSP|1|a|A|1746

Current chains

Chain a

23S rRNA

Nearby chains