IL_8HSP_152

3D structure

PDB id

8HSP (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with tRNA_Ile2 bearing L34 and t6A37 in classical state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

AUA*UGUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HSP_152 not in the Motif Atlas

Geometric match to IL_4WF9_092

Geometric discrepancy: 0.1727

The information below is about IL_4WF9_092

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_51387.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

20

Unit IDs

8HSP|1|a|A|2459
8HSP|1|a|U|2460
8HSP|1|a|A|2461
*
8HSP|1|a|U|2489
8HSP|1|a|G|2490
8HSP|1|a|U|2491
8HSP|1|a|U|2492
8HSP|1|a|U|2493

Current chains

Chain a

23S rRNA

Nearby chains

Chain X

Transfer RNA; tRNA

Chain l

50S ribosomal protein L16